RODEOS Main Documentation

The aim of the RODEOS (Raw Omics Data accEss and Organization System) system is to facilitate the management and access to Omics raw mass data (e.g., genomics or proteomics data). The system itself is based on the iRODS ecosystem:

• iRODS for mass data storage and meta data management,

• Metalnx as a graphical user interface to iRODS, and

• Davrods for WebDAV based access to the data.

This is the main entry point for the documentation. It describes the big picture and how the different components interact. Where appropriate, it references to the (external) documentation of the particular components.

Introduction

• Overview
• Related Software

Implementation Details

• Ingest Architecture
• Connecting Sequencers
• Connecting Demultiplexing
• Reference Implementation
• iRODS Customization

Use Cases

• Administrator Use Cases
• Facility Staff Use Cases
• Customer Use Cases